Consiglio Nazionale delle Ricerche
Institute of Biology and Agricultural Biotechnology
Programs
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Description
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Arabidopsis Motif Scanner identifies the position of transcription factors binding sites in Arabidopsis genome
and associate them to the corrispective genes as well as indicates the genome interactions
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Complement Reverse reverses and makes complement of nucleotide sequences.
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Extension Doctor removes stretches of identical nucleotides at the 3' and 5' ends of fasta or tab formatted
sequences
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Fasta-Tab Sorter performs natural sort of sequences in fasta or tab format.
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Fold change calculator calculates the fold change for qPCR expression analysis using ΔΔCT method
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Nuc-End-Remover removes stretches of nucleotides at the 3' and 5' ends of fasta or tab formatted sequences
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Protein Sequence Converter converts files containing protein sequences in the corrispondent DNA degenerate
sequences
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Format Converter converts files containing fasta, fastq or tab delimited sequences
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Sequence Counter counts the number of sequences contained in a fasta, tab or fastq file.
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Sequence Trimmer trims right and/or left nucleotide sequences.
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SNP Validator is designed to facilitate and accelerate SNP analyses. SNP Validator compare different vcf SNP
reports and produces correct reference sequences
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Split Chimeras splits wrongly assembled contig derived from de novo NGS data
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Split & Join splits or joins files containing fasta, tab or fastq sequences.
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Vector Cutter identifies and removes verctor arms
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Visual Blast was design to facilitate and accelerate protein and nucleotide BLAST analysis and uses the original
NCBI blast executables.
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Visual Velvet is a de novo genomic assembler specially designed for short read sequencing technologies. It was
design to facilitate and accelerate NGS analyses and uses windows adaped classes developed by Daniel Zerbino
and Ewan Birney.
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