Programs
Description
Arabidopsis Motif Scanner
Arabidopsis Motif Scanner identifies the position of transcription factors binding sites in Arabidopsis genome
and associate them to the corrispective genes as well as indicates the genome interactions
Complement Reverse
Complement Reverse reverses and makes complement of nucleotide sequences.
Extension Doctor
Extension Doctor removes stretches of identical nucleotides at the 3' and 5' ends of fasta or tab formatted
sequences
Fasta-Tab Sorter
Fasta-Tab Sorter performs natural sort of sequences in fasta or tab format.
Nuc-End-Remover
Nuc-End-Remover removes stretches of nucleotides at the 3' and 5' ends of fasta or tab formatted sequences
Protein Sequence Converter
Protein Sequence Converter converts files containing  protein sequences in the corrispondent DNA degenerate
sequences
Seq Format Converter
Format Converter converts files containing fasta, fastq or tab delimited sequences
Sequence Counter
Sequence Counter counts the number of sequences contained in a fasta, tab or fastq file.
Sequence Trimmer
Sequence Trimmer trims right and/or left nucleotide sequences.
SNP Validator
SNP Validator is designed to facilitate and accelerate SNP analyses. SNP Validator compare different vcf SNP
reports and produces correct reference sequences
Split Chimeras
Split Chimeras splits wrongly assembled contig derived from de novo NGS data
Split & Join
Split & Join splits or joins files containing fasta, tab or fastq sequences.
Vector Cutter
Vector Cutter identifies and removes verctor arms
Visual Blast
Visual Blast was design to facilitate and accelerate protein and nucleotide BLAST analysis and uses the original
NCBI blast executables.
Visual Velvet
Visual Velvet is a de novo genomic assembler specially designed for short read sequencing technologies. It was
design to facilitate and accelerate NGS analyses and uses windows adaped classes developed by Daniel Zerbino
and Ewan Birney.
The programs  have an intuitive drag and drop graphical user interface (GUI) and are written in C# for 32 and 64 bit Windows Vista and above
Consiglio Nazionale delle Ricerche
Institute of Biology and Agricultural Biotechnology